The answer was meant to be that the concentrations of the substances are equal, and that Ka = [H+].
I didn't like this question though - I think the analysis for this is too complex for Year 12 level, especially for those who try to think deeply through this.
So, if we took reaction:
CH3COOH --> CH3COO- + H+
and we added exactly half the amount of OH- to neutralise the CH3COOH, we are effectively removing reactant and adding product, and their concentrations will be equal at this point. And you are right by saying that by Le Chatelier's Principle, some of the CH3COO- will react with the H+ to form CH3COOH subsequently. So technically, [CH3COOH] will be ever so slightly higher than [CH3COO-] and hence Ka > [H+].
However, the idea was that so little of the CH3COO- will have reacted since its concentration is so much higher than that of H+, so it doesn't take measurable amounts of it to react with the H+. Hence, we can say that [CH3COOH] = [CH3COO-] and Ka = [H+].
If I was the chief examiner (which I am most certainly not

) I would pay both answers because I think it's unfair for students to be expected to perform that kind of reasoning.