I've had a look through the short answer questions, here are some thoughts that I'd add to the following:
1b
VCAA will award marks for a number of different answers here. Puncture a hole in the membrane would probably not get marks, as stated on the answers.
My guess is that VCAA were learning towards a more "gets in the way" kind of thing, interferes with normal cell processes because the aggregates accumulate. The reality is a lot more complex (aggregated amyloid beta, for instance, generates free radicals that wreak havoc etc.)
3a
Granum/grana would also get a mark
4a
Don't agree with the mark break up of this.
1 mark for Ebola antigen/attenuated Ebola or the like stimulates B-cell response
1 mark that after the antigen/virus is cleared memory B-cells are left
1 mark that upon reinfection with Ebola memory B-cell population expands quickly
1 mark plasma B-cells produce antibodies to remove the Ebola virus
If you got the essence of vaccine makes memory B-cell population and upon reinfection this population props up and kills it off you would probably get the marks. If they really need to discriminate they'll shift a mark to "memory B-cells are long-lived" because they did specifically ask about long-term immunity
5a
Answer is correct. Just wanted to note that this is a really disappointing question, I daresay most would not have been taught this. The valves allow for unidirectional flow of lymph.
5c
You must mention secretion to get full marks for this. It's not enough to just say that the rough ER allows for protein to be produced. It's new on the course (since 2013), but you have to know that the RER is involved in secretion.
So one mark for large amounts of protein produced, another for that that protein is secreted. They may even expect you to acknowledge that the protein produced is an antibody
6bi
Maybe synapsis too
6c
Mention the genes. Some gametes will lose T, others gain T, U and V also implicated. Not going to elaborate on all of it, but best to mention the letters since they're given. This is a clear application question. You need to respond to the material you're given and prove that you understand it specifically.
7c
Different GC receptors and different secondary messengers are both acceptable. Not sure which is actually right in this case though.
Even though I've picked on some things, these are brilliant answers. If yours are anywhere near these, you've done exceptionally well.