Whats the difference between amino acids and zwitterions?
All amino acids (in VCE, at least. inb4 someone who actually knows biochem knocks me back) are zwitterions, not all zwitterions are amino acids. A zwitterion is a type of ion that shows a positive and negative charge at the same time, an amino acid is just a type of zwitterion (hence the name "amino
acid" being kinda stupid)
How can we go from an amino acid to a zwitteroin?
By putting that amino acid into solution.
How does pH affect an amino acid zwitterion? (with examples, please)
Consider the following examples:
Acidic pH:
The solution will be absolutely drenched with protons - they're absolutely everywhere. So, your amino acid's carboxyl group is very likely to get protonated.
Neutral pH:
There's no excess of protons or hydroxides, so our amino acid will simply exist in zwitterion form.
Basic pH:
The solution will be absolutely drenched with hydroxides (as opposed to protons). So, these hydroxides will try to grab onto a proton whenever it can - so, it will take the excess proton on the amine group of the amino acid.
Regarding the bonds of proteins and their structures, how can you describe the secondary structure, and what bonds are responsible for the alpha helices and b pleated sheets to form?
Usually, through covalent bonds, di-sulfide bridges and other intermolecular forces.
What types of bonds can form between enzymes and their specific substrate?
Any bond ever - but, normally they're just hydrogen bonds.