Could someone explain the principles behind nmr, ir, and mass spectroscopy. I'm having trouble understanding those techniques. Thanks
I'll explain IR, just because I feel most confident in it, I might get this wrong though, anyone can correct! OK: infrared waves are not as high a frequency as the electromagnetic wavelengths of the visible, UV and gamma rays. The infrared radiation CANNOT alter the valence electrons in the atoms of a molecule. What they do alter is the bonds between atoms, where as you would know they are constantly vibrating, and as each bond is different thus absorbs a SPECIFIC wavelength or infrared (IR) radiation. For an easy example: if 10 chocolate bars come through (the specific wavelenth of IR radiation), 2 come out (transmittance to the detector) then it must be so, that there are bonds in our sample that have absorbed 8 chocolate bars (the specific wavelength!). The graph/spectra of IR measures: TRANSMITTANCE (how much comes through) with inverted peaks signifying what has been absorbed at that specific wavelength, if less of that SPECIFIC wavelength is being detected after that wavelength is passed through the sample, it means it has absorbed it, the lower the inverted peak the more STRONGLY it has absorbed that. This type of spectrum measures transmittance, how much comes through the detector, NOT absorbance where: nothing being absorbed would see a line of no absorbance at that wavelength down the bottom, as IR measures transmittance, nothing being absorbed would have ALL the wavelength coming through the detector indicating 100% transmittance (therefore 0% absorbance) and a line across the top. Effectively, if IR spectroscopy measures transmittance, and inverted peaks means less of that specific wavelength reaches the detector indicating absorption....THEN if one were to flip the spectrum upside down, we would see a standard spectrum of absorption, as now the inverted peaks that measured what wasn't coming through the detector indicating what has been absorbed, are now peaks of absorption.

This spectrum of ethanol shows how different wavelengths of IR are absorbed by the bonds, meaning that less of that wavelength comes through the other side of the sample, thus an inverted peak/trough now appears. Hope that explained the logistics of this technique, are you doing 3/4 chemistry in Year 11, or just curious?
